How can you turn an index array into a mask array in Numpy?

For a single dimension, try:

n = (15,)
index_array = [2, 5, 7]
mask_array = numpy.zeros(n)
mask_array[index_array] = 1

For more than one dimension, convert your n-dimensional indices into one-dimensional ones, then use ravel:

n = (15, 15)
index_array = [[1, 4, 6], [10, 11, 2]] # you may need to transpose your indices!
mask_array = numpy.zeros(n)
flat_index_array = np.ravel_multi_index(
    index_array,
    mask_array.shape)
numpy.ravel(mask_array)[flat_index_array] = 1

Here's one way:

In [1]: index_array = np.array([3, 4, 7, 9])

In [2]: n = 15

In [3]: mask_array = np.zeros(n, dtype=int)

In [4]: mask_array[index_array] = 1

In [5]: mask_array
Out[5]: array([0, 0, 0, 1, 1, 0, 0, 1, 0, 1, 0, 0, 0, 0, 0])

If the mask is always a range, you can eliminate index_array, and assign 1 to a slice:

In [6]: mask_array = np.zeros(n, dtype=int)

In [7]: mask_array[5:10] = 1

In [8]: mask_array
Out[8]: array([0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0])

If you want an array of boolean values instead of integers, change the dtype of mask_array when it is created:

In [11]: mask_array = np.zeros(n, dtype=bool)

In [12]: mask_array
Out[12]: 
array([False, False, False, False, False, False, False, False, False,
       False, False, False, False, False, False], dtype=bool)

In [13]: mask_array[5:10] = True

In [14]: mask_array
Out[14]: 
array([False, False, False, False, False,  True,  True,  True,  True,
        True, False, False, False, False, False], dtype=bool)