Calculate, decode and plot routes on map using leaflet and R

What you have to do:

• Import the points
• Calculate all routes between the points (I use OSRM)
• Extract the route geometry from the routes (Appreciate the reference and have a look there for the speed updates!). Thanks to @SymbolixAU: You can also use googleway::decode_pl() or gepaf::decodePolyline()
• Display everything on a map (I use leaflet)

My approach is not optimized for anything, but it should do the job... (It is script in RStudio, therefore the print() statements after leaflet.)

library(leaflet)
library(stringr)
library(bitops)

df <- structure(list(
  lat = c(-33.9409444, -33.9335713, -33.9333906, -33.9297826), 
  lng = c(18.5001774, 18.5033218, 18.518719, 18.5209372)),
  .Names = c("lat", "lng"), 
  row.names = c(NA, 4L), class = "data.frame")
nn <- nrow(df)

# Functions
# =========
viaroute <- function(lat1, lng1, lat2, lng2) {
  R.utils::evalWithTimeout({
    repeat {
      res <- try(
        route <- rjson::fromJSON(
          file = paste("http://router.project-osrm.org/route/v1/driving/",
                       lng1, ",", lat1, ";", lng2, ",", lat2,
                       "?overview=full", sep = "", NULL)))
      if (class(res) != "try-error") {
        if (!is.null(res)) {
          break
        }
      }
    }
  }, timeout = 1, onTimeout = "warning")
  return(res)
}

decode_geom <- function(encoded) {
  scale <- 1e-5
  len = str_length(encoded)
  encoded <- strsplit(encoded, NULL)[[1]]
  index = 1
  N <- 100000
  df.index <- 1
  array = matrix(nrow = N, ncol = 2)
  lat <- dlat <- lng <- dlnt <- b <- shift <- result <- 0

  while (index <= len) {
    # if (index == 80) browser()
    shift <- result <- 0
    repeat {
      b = as.integer(charToRaw(encoded[index])) - 63
      index <- index + 1
      result = bitOr(result, bitShiftL(bitAnd(b, 0x1f), shift))
      shift = shift + 5
      if (b < 0x20) break
    }
    dlat = ifelse(bitAnd(result, 1),
                  -(result - (bitShiftR(result, 1))),
                  bitShiftR(result, 1))
    lat = lat + dlat;

    shift <- result <- b <- 0
    repeat {
      b = as.integer(charToRaw(encoded[index])) - 63
      index <- index + 1
      result = bitOr(result, bitShiftL(bitAnd(b, 0x1f), shift))
      shift = shift + 5
      if (b < 0x20) break
    }
    dlng = ifelse(bitAnd(result, 1),
                  -(result - (bitShiftR(result, 1))),
                  bitShiftR(result, 1))
    lng = lng + dlng

    array[df.index,] <- c(lat = lat * scale, lng = lng * scale)
    df.index <- df.index + 1
  }

  geometry <- data.frame(array[1:df.index - 1,])
  names(geometry) <- c("lat", "lng")
  return(geometry)
}

map <- function() {
  m <- leaflet() %>%
    addTiles(group = "OSM") %>%
    addProviderTiles("Stamen.TonerLite") %>%
    addLayersControl(
      baseGroups = c("OSM", "Stamen.TonerLite")
    )
  return(m)
}

map_route <- function(df, my_list) {
  m <- map()
  m <- addCircleMarkers(map = m,
                        lat = df$lat,
                        lng = df$lng,
                        color = "blue",
                        stroke = FALSE,
                        radius = 6,
                        fillOpacity = 0.8) %>%
    addLayersControl(baseGroups = c("OSM", "Stamen.TonerLite")) %>%
    {
      for (i in 1:length(my_list)) {
        . <- addPolylines(., lat = my_list[[i]]$lat, lng = my_list[[i]]$lng, color = "red", weight = 4)
      }
      return(.)
    }
  return(m)
}

# Main
# ======
m <- map()
m <- m %>% addCircleMarkers(lat = df$lat,
                       lng = df$lng,
                       color = "red",
                       stroke = FALSE,
                       radius = 10,
                       fillOpacity = 0.8)
print(m)

my_list <- list()
r <- 1
for (i in 1:(nn-1)) {
  for (j in ((i+1):nn)) {
    my_route <- viaroute(df$lat[i], df$lng[i],df$lat[j], df$lng[j])
    geom <- decode_geom(my_route$routes[[1]]$geometry)
    my_list[[r]] <- geom
    r <- r + 1
  }
}

print(map_route(df, my_list))

Result:

In the end, you have to put all that in your shiny server...
I hope that helps!

Another more efficient way to calculate routes between points is with the osrm package: Interface Between R and the OpenStreetMap-Based Routing Service OSRM. Look at this example:

library(osrm)
library(leaflet)

df = data.frame(com = c("A", "B", "C"),
                lon = c(31.043515, 31.029080, 31.002896),
                lat = c(-29.778562, -29.795506, -29.836168),
                time = as.POSIXct(c("2020-03-18 07:56:59","2020-03-18 12:28:58","2020-03-18 18:24:52")))


trips <- osrmTrip(df, returnclass="sf")
trip <- trips[[1]]$trip

leaflet(trip) %>% 
  addProviderTiles("Stamen.TonerLite", group = "OSM") %>% 
  addPolylines() %>%
  addCircleMarkers(lat = df$lat,
                   lng = df$lon,
                   popup = paste(df$com,"-",format(df$time,"%H:%M:%S")),
                   color = "red",
                   stroke = FALSE,
                   radius = 8,
                   fillOpacity = 0.8)